Single Cell OmixAtlas

Explore the world's largest single cell database, meticulously curated and made available for analysis

Data on the Single Cell OmixAtlas

Polly's single cell studies are engineered to a consistent H5AD format that accurately captures author provided cell annotations, expression values and associated metadata.

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Cell Types




Tissue Types

Sourced from 10+ public portals

Why Access Single Cell Data
on Polly?

Systematically curated & quality controlled

Access thousands of curated single cell studies that reliably capture cell annotations and expression values from the publication. Polly's curation ensures cell annotations are standardized with consistent ontologies across studies and expression values are reproducible.

Perform advanced querying across the single cell OmixAtlas

Identify relevant single cell studies by searching curated fields like source, treatment protocol, and disease area using an intuitive UI or SQL. Search for similar expression profiles or examine categorical metadata within minutes using integrations with tools like Cell by Gene and spotfire

Enjoy uncomplicated data connectivity

Export data to your existing analytical set up using API based integrations. Datasets from the Single Cell OmixAtlas have been engineered to a consistent H5AD format that is compatible with commonly used single cell pipelines or applications.

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