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Evidence-Driven Target Discovery: Knowledge Graphs That Reconstruct Disease-State Transitions

What the AI Co-Scientist Paper Actually Demonstrates for Biologists and Data Scientists

July 14, 2026
9 AM PT

Any commodity knowledge graph or even a well prompted LLM can connect genes to diseases, drugs to targets, and targets to pathways. That's now table stakes - and it's not what moves a discovery program forward.

Real target discovery turns on mechanistic questions. In AML, the one that matters isn't which genes associate with the disease - it's what pushes a leukemic blast out of a self-renewing, differentiation-arrested state and onto a myeloid differentiation trajectory? Answering that takes directional, mechanistic evidence.

The evidence usually exists. The problem is that it's buried - in full-text methods sections, supplementary tables, experimental figures, and clinical readouts - and commodity graphs flatten it into undifferentiated associations, stripping out the directionality, evidence type, and biological context that make it decision-grade. Computational biology teams are left assembling that package by hand.

This webinar shows how our data infrastructure turns fragmented scientific data into queryable biological evidence through mechanistically rich knowledge graphs. Those graphs are now connected to LLMs via MCP servers - so the evidence is directly accessible from the AI tools your scientists already use. We'll work through it with AML as a running example and benchmark our approach against today's research assistants and literature-search workflows.

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Meet the Expert of this discussion
Jainik Dedhia
Senior Product Manager, Elucidata
Krishna Patel
Scientific Manager, Elucidata
Hatim Zariwala
Director of Venture Science, FVE Foundry, Formation Venture Engineering

Real-World Applications We’ll Cover

  • Scaling clinico-genomic data integration: Large pharmaceutical organizations working with external data providers used Polly to build interoperable clinico-genomic data products 6x faster.
    Although purchased datasets are often labeled as "clean," they still lack interoperability—Polly's pipelines bridge this gap with robust integration and harmonization.

  • Information Retrieval: Drug safety monitoring teams used Polly's Knowledge Graph powered co-scientist to conversationally retrieve the right cohorts & assess drug response—cutting discovery time by 70%.

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Join us for a behind-the-scenes look at a Multi-agent AI system that achieves:
  • 93% recall across 23 key metadata fields including tissue, disease, cell line, donor ID, and treatment.
  • Outperformance of GPT-4.1 single-pass prompting on accuracy, F1 score, and traceability.
  • Curation of 4652 samples from 78 GEO datasets in days instead of weeks.
  • 4x reduction in manual effort equivalent to replacing a 3-person expert team working for 1 month.
  • Human-level accuracy, with 100% concordance on disease and 97% on gender based on CellxGene benchmarks.
  • Traceable records with field-level evidence attribution and confidence scores.
Register for our webinar to see how the Agentic AI system fits into scalable data workflows.

What You’ll Learn

  • Reconstruct disease states - How we build knowledge graphs that carry genuine directionality, evidence type, and biological context.
  • Access scientific evidence through AI - How our MCP servers and specialized Skills let researchers query trusted scientific data directly from AI assistants like Anthropic's Claude.
  • Evaluate hypotheses with greater confidence - How evidence-backed workflows help teams test assumptions and build conviction in targets selected for their programs
  • Find the evidence that matters - Our approach to surfacing critical evidence locked in full-text papers, supplementary data, experimental studies, and clinical results.
Register now
Meet the Expert of this discussion
Jainik Dedhia
Senior Product Manager, Elucidata
Krishna Patel
Scientific Manager, Elucidata
Hatim Zariwala
Director of Venture Science, FVE Foundry, Formation Venture Engineering
Meet the Expert of this discussion
Jainik Dedhia
Senior Product Manager, Elucidata
Krishna Patel
Scientific Manager, Elucidata
Hatim Zariwala
Director of Venture Science, FVE Foundry, Formation Venture Engineering
What Sets polly KG Apart
Natural language querying with reasoning on
the roadmap
Cross-species graphs built from both proprietary
and public data
Custom scoring logic and domain-specific
ontology support
Seamless integration with internal tools, platforms,
and security frameworks
Who Should Attend
Translational Scientists and Discovery Leads
Computational Biologists and Data Scientists
Platform Owners, heads of R&D IT
Innovation and AI Strategy Teams
Who Should Attend
Translational Scientists and Discovery Leads
Data Science & Informatics Teams
Computational Biologists and R&D IT Leaders
Innovation & AI Strategy Teams

Why This Matters for Biomedical Researchers

Adopting a Data-Centric and OOD-aware approach is essential for delivering real therapeutic impact.

If you’re working with complex biological data, you may be asking:

  • Can generative AI truly assist in scientific reasoning, not just data analysis?

  • What does it mean for hypothesis generation, literature review, or even designing experiments?

  • Could this accelerate—not replace—my discovery pipeline?

Whether you're skeptical, curious, or already experimenting with AI in your lab—this is a session designed to ground your understanding in evidence, not speculation.

  • For Computational Biologists – Get a clear framework towards Knowledge graphs that scale qualified evidence in a decision-ready format.
  • For Discovery Scientists – How capturing biological signals that are spread across full-text methods sections can give you a richer data foundation to validate targets.
  • For R&D Leadership – Back high-stakes pipeline decisions with confidence-graded evidence.
  • For Data & Informatics Teams – What it takes to integrate modern Model Context Protocol (MCP) infrastructure and biological Skills into your existing environment.

Traditional KG

  • For Computational Biologists – Get a clear framework towards Knowledge graphs that scale qualified evidence in a decision-ready format.
  • For Discovery Scientists – How capturing biological signals that are spread across full-text methods sections can give you a richer data foundation to validate targets.
  • For R&D Leadership – Back high-stakes pipeline decisions with confidence-graded evidence.
  • For Data & Informatics Teams – What it takes to integrate modern Model Context Protocol (MCP) infrastructure and biological Skills into your existing environment.

Polly KG

Register now
Meet the Experts of this discussion
Jainik Dedhia
Senior Product Manager, Elucidata
Krishna Patel
Scientific Manager, Elucidata
Hatim Zariwala
Director of Venture Science, FVE Foundry, Formation Venture Engineering
Harshveer Singh
Director Engineering Research & Development, Elucidata
Key Takeaways
How data providers ensure adherence to quality standards through validation and compliance.
How GUI-based workflows, CLI tools, and collaborative workspaces enable streamlined data ingestion and synchronization at scale.
Understand how automated pipelines assess conformance, plausibility, and consistency, ensuring high-quality, AI-ready data products.
Key Takeaways
Reduce operational costs by streamlining data delivery through reusable, governed products.
Accelerate diagnostic development and clinical trial execution by delivering compliant, high-quality data at scale.
Improve audit readiness and regulatory confidence through governed data products and built-in quality assurance.
Equip cross-functional teams to act on trusted data—faster, and with greater confidence.
Who Should Attend
Translational Scientists and Discovery Leads
Computational Biologists and Data Scientists
Platform Owners, heads of R&D IT
Innovation and AI Strategy Teams
What Sets polly KG Apart
First KG to integrate molecular data alongside patient data records
Feature distillation pipeline for high-dimensional clinical and trial data
Base KG usable immediately, with flexible schema extensions
Cross-species graphs built from proprietary, public, and clinical datasets
Who Should Attend?

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